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SRX11140389: GSM5380720: WT Spleen Treg rep1 (H1); Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 47.1M spots, 14.1G bases, 5.6Gb downloads

Submitted by: NCBI (GEO)
Study: Gene expression profile of effector Treg cells isolated from spleens and tumors of tumor-bearing mice
show Abstracthide Abstract
A majority of effector Treg cells (eTregs) that are abundant in many types of tumors are marked by the expression of Blimp1. However, the specific impact of Blimp1+ eTregs on, and mechanisms of action within, tumors remain unknown. To better understand the role of Blimp1 in the regulation of eTreg function in the tumor immunity, we profiled the differential gene expression in Blimp1-deficient eTregs compared to WT control eTregs from tumor-bearing mice. Overall design: Prdm1fl/flFoxP3YFP-Cre (KO) and FoxP3YFP-Cre (WT) mice were subcutaneously inoculated with B16.OVA at day 0, and intraperitoneally immunized with NP-OVA in CFA at day 0 and NP-OVA in IFA at day 7. When the tumor reached = 1.5 cm3, CD45+CD44+YFP+(FoxP3+)CD4+CD3+ Tregs were FACS-sorted from spleens and tumors of these mice. RNA was prepared and sequencing was performed at Genewiz (South Plainfield, NJ) using Ultra-Low Input RNA-Seq Service.
Sample: WT Spleen Treg rep1 (H1)
SAMN19694751 • SRS9202923 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted using a QIAshredder kit (QIAGEN) and an RNeasy Plus Micro Kit (QIAGEN) according to the manufacturer's protocol. mRNA was specifically enriched from total RNA by removing rRNA and hydrolyzed into small pieces. The fragments were then reverse-transcribed into first-strand cDNA using random hexamer primers, followed by second strand synthesis. The short cDNA strands were ligated with 3′- and 5′-adapters for amplification and sequencing using the Illumina® platforms (HiSeq 2 x 150 bp, single index, per lane).
Experiment attributes:
GEO Accession: GSM5380720
Links:
Runs: 1 run, 47.1M spots, 14.1G bases, 5.6Gb
Run# of Spots# of BasesSizePublished
SRR1480770647,108,56914.1G5.6Gb2021-11-25

ID:
14826002

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